SSL Cert Renewal Error

I am unable to renew my SSL cert. I have plenty of free memory and it has worked up until this latest renewal. I am not nearly good enough with Linux to read or understand this log so I was hoping someone could help me out.

2019-01-23 15:00:12,121 (DEBUG) ee : logging initialized for 'ee' using LoggingLogHandler
2019-01-23 15:00:12,395 (DEBUG) ee : ['/usr/local/bin/ee', 'site', 'update', '--le=renew', '--all']
2019-01-23 15:00:12,395 (DEBUG) ee : collecting arguments/commands for <ee.cli.controllers.base.EEBaseController object at 0x7f0d8565eda0>
2019-01-23 15:00:12,397 (DEBUG) ee : collecting arguments/commands for <ee.cli.plugins.site.EESiteController object at 0x7f0d8565ed30>
2019-01-23 15:00:12,399 (DEBUG) ee : collecting arguments/commands for <ee.cli.plugins.site.EESiteUpdateController object at 0x7f0d8566e630>
2019-01-23 15:00:12,402 (INFO) ee : Initializing EasyEngine Database
2019-01-23 15:00:12,431 (INFO) ee : e[94me[0me[1mUpdating site iwp.cfimortgage.com, please wait...e[0m
2019-01-23 15:00:12,433 (DEBUG) ee : e[95mRunning command: date -d "now" +%se[0m
2019-01-23 15:00:12,437 (DEBUG) ee : e[95mCommand Output: 1548255612
, 
Command Error: e[0m
2019-01-23 15:00:12,437 (DEBUG) ee : e[95mRunning command: date -d "`openssl x509 -in /etc/letsencrypt/live/iwp.cfimortgage.com/cert.pem -text -noout|grep "Not After"|cut -c 25-`" +%se[0m
2019-01-23 15:00:12,445 (DEBUG) ee : e[95mCommand Output: 1549479415
, 
Command Error: e[0m
2019-01-23 15:00:12,445 (DEBUG) ee : e[95mChanging directory to /opt/letsencrypte[0m
2019-01-23 15:00:12,445 (DEBUG) ee : e[95mRunning command: git pulle[0m
2019-01-23 15:00:13,872 (DEBUG) ee : e[95mCommand Output: Already up-to-date.
, 
Command Error: e[0m
2019-01-23 15:00:13,873 (INFO) ee : e[94mRenewing SSl cert for https://iwp.cfimortgage.come[0m
2019-01-23 15:00:13,873 (DEBUG) ee : e[95mRunning command: ./letsencrypt-auto --renew-by-default certonly --webroot -w /var/www/iwp.cfimortgage.com/htdocs/ -d iwp.cfimortgage.com -d www.iwp.cfimortgage.com --email [email protected] --text --agree-tose[0m
2019-01-23 15:00:32,905 (DEBUG) ee : e[95mCommand Output: Bootstrapping dependencies for Debian-based OSes... (you can skip this with --no-bootstrap)
Hit:1 http://sfo1.mirrors.digitalocean.com/mariadb/repo/10.1/ubuntu xenial InRelease
Hit:2 http://ppa.launchpad.net/ondrej/php/ubuntu xenial InRelease
Get:3 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]
Ign:4 http://download.opensuse.org/repositories/home:/rtCamp:/EasyEngine/xUbuntu_16.04  InRelease
Hit:5 http://download.opensuse.org/repositories/home:/rtCamp:/EasyEngine/xUbuntu_16.04  Release
Hit:7 http://nyc2.mirrors.digitalocean.com/ubuntu xenial InRelease
Hit:8 https://repos.sonar.digitalocean.com/apt main InRelease
Hit:9 http://nyc2.mirrors.digitalocean.com/ubuntu xenial-updates InRelease
Hit:10 http://nyc2.mirrors.digitalocean.com/ubuntu xenial-backports InRelease
Fetched 109 kB in 1s (99.7 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
gcc is already the newest version (4:5.3.1-1ubuntu1).
libffi-dev is already the newest version (3.2.1-4).
augeas-lenses is already the newest version (1.4.0-0ubuntu1.1).
ca-certificates is already the newest version (20170717~16.04.2).
libaugeas0 is already the newest version (1.4.0-0ubuntu1.1).
python is already the newest version (2.7.12-1~16.04).
python-dev is already the newest version (2.7.12-1~16.04).
python-virtualenv is already the newest version (15.0.1+ds-3ubuntu1).
virtualenv is already the newest version (15.0.1+ds-3ubuntu1).
libssl-dev is already the newest version (1.1.1a-2+ubuntu16.04.1+deb.sury.org+1).
openssl is already the newest version (1.1.0h-2.0+ubuntu16.04.1+deb.sury.org+1).
0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Creating virtual environment...
Installing Python packages...
Had a problem while installing Python packages.

pip prints the following errors: 
=====================================================
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Collecting argparse==1.4.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 11))
  Downloading https://files.pythonhosted.org/packages/f2/94/3af39d34be01a24a6e65433d19e107099374224905f1e0cc6bbe1fd22a2f/argparse-1.4.0-py2.py3-none-any.whl
Collecting pycparser==2.14 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 17))
  Downloading https://files.pythonhosted.org/packages/6d/31/666614af3db0acf377876d48688c5d334b6e493b96d21aa7d332169bee50/pycparser-2.14.tar.gz (223kB)
Collecting asn1crypto==0.22.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/97/ba/7e8117d8efcee589f4d96dd2b2eb1d997f96d27d214cf2b7134ad8acf6ab/asn1crypto-0.22.0-py2.py3-none-any.whl (97kB)
Collecting cffi==1.11.5 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 24))
  Downloading https://files.pythonhosted.org/packages/14/dd/3e7a1e1280e7d767bd3fa15791759c91ec19058ebe31217fe66f3e9a8c49/cffi-1.11.5-cp27-cp27mu-manylinux1_x86_64.whl (407kB)
Collecting ConfigArgParse==0.12.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 57))
  Downloading https://files.pythonhosted.org/packages/17/8d/4a41f11b0971017c7001f118be8003da8f7b96b010c66cd792b76658d1e1/ConfigArgParse-0.12.0.tar.gz (41kB)
Collecting configobj==5.0.6 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 60))
  Downloading https://files.pythonhosted.org/packages/64/61/079eb60459c44929e684fa7d9e2fdca403f67d64dd9dbac27296be2e0fab/configobj-5.0.6.tar.gz
Collecting cryptography==2.2.2 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 63))
  Downloading https://files.pythonhosted.org/packages/dd/c2/3a5bfefb25690725824ade71e6b65449f0a9f4b29702cce10560f786ebf6/cryptography-2.2.2-cp27-cp27mu-manylinux1_x86_64.whl (2.2MB)
Collecting enum34==1.1.2 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 83))
  Downloading https://files.pythonhosted.org/packages/6f/e9/08fd439384b7e3d613e75a6c8236b8e64d90c47d23413493b38d4229a9a5/enum34-1.1.2.tar.gz (46kB)
Collecting funcsigs==1.0.2 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 86))
  Downloading https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
Collecting idna==2.5 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 89))
  Downloading https://files.pythonhosted.org/packages/11/7d/9bbbd7bb35f34b0169542487d2a8859e44306bb2e6a4455d491800a5621f/idna-2.5-py2.py3-none-any.whl (55kB)
Collecting ipaddress==1.0.16 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 92))
  Downloading https://files.pythonhosted.org/packages/23/6a/813ac29a01e4c33c19c2bded98ac3d4266ebbf0bd2c0eb0020e1c969958d/ipaddress-1.0.16-py27-none-any.whl
Collecting josepy==1.1.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 95))
  Downloading https://files.pythonhosted.org/packages/23/46/30ac29742b03be92e05d1fd9048df6f0902bb0b3b042a7ea76a2b3c30f7e/josepy-1.1.0-py2.py3-none-any.whl (53kB)
Collecting linecache2==1.0.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 98))
  Downloading https://files.pythonhosted.org/packages/c7/a3/c5da2a44c85bfbb6eebcfc1dde24933f8704441b98fdde6528f4831757a6/linecache2-1.0.0-py2.py3-none-any.whl
Collecting mock==1.3.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 102))
  Downloading https://files.pythonhosted.org/packages/b2/50/664a70b87408bb6c14c1af2337efa64eb8d1af80c933531758b8fb41ec25/mock-1.3.0-py2.py3-none-any.whl (56kB)
Collecting ordereddict==1.1 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 105))
  Downloading https://files.pythonhosted.org/packages/53/25/ef88e8e45db141faa9598fbf7ad0062df8f50f881a36ed6a0073e1572126/ordereddict-1.1.tar.gz
Collecting packaging==16.8 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 108))
  Downloading https://files.pythonhosted.org/packages/87/1b/c39b7c65b5612812b83d6cab7ef2885eac9f6beb0b7b8a7071a186aea3b1/packaging-16.8-py2.py3-none-any.whl
Collecting parsedatetime==2.1 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 111))
  Downloading https://files.pythonhosted.org/packages/85/1f/13fc06097e516f6259d62cea502b116451321c96e18a9d0fff9da3442e02/parsedatetime-2.1-py2-none-any.whl
Collecting pbr==1.8.1 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 114))
  Downloading https://files.pythonhosted.org/packages/fc/37/94af8387babb09796d306b18cf94ee5c70388c875a16d8a88e471500452c/pbr-1.8.1-py2.py3-none-any.whl (89kB)
Collecting pyOpenSSL==16.2.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 117))
  Downloading https://files.pythonhosted.org/packages/ac/93/b4cd538d31adacd07f83013860db6b88d78755af1f3fefe68ec22d397e7b/pyOpenSSL-16.2.0-py2.py3-none-any.whl (43kB)
Collecting pyparsing==2.1.8 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 120))
  Downloading https://files.pythonhosted.org/packages/85/b9/188515f35f78533b3f82966a2c3f1a71a86df8b801367ee75a77191a861d/pyparsing-2.1.8-py2.py3-none-any.whl (54kB)
Collecting pyRFC3339==1.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 129))
  Downloading https://files.pythonhosted.org/packages/9b/0a/decfa17e7707afca17d6e9595ff5c79c1c71c74063ad95576f897ed3a9f1/pyRFC3339-1.0-py2.py3-none-any.whl
Collecting python-augeas==0.5.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 132))
  Downloading https://files.pythonhosted.org/packages/41/e6/4b6740cb3e31b82252099994cea751c648b846aa7874343c31d68c2215be/python-augeas-0.5.0.tar.gz (90kB)
Collecting pytz==2015.7 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 135))
  Downloading https://files.pythonhosted.org/packages/c0/28/973f0382c803b21734cd7e97e0590928148ee21b1cbe8f7fed8b506204fb/pytz-2015.7-py2.py3-none-any.whl (476kB)
Collecting requests==2.20.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 149))
  Downloading https://files.pythonhosted.org/packages/f1/ca/10332a30cb25b627192b4ea272c351bce3ca1091e541245cccbace6051d8/requests-2.20.0-py2.py3-none-any.whl (60kB)
Collecting six==1.10.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 152))
  Downloading https://files.pythonhosted.org/packages/c8/0a/b6723e1bc4c516cb687841499455a8505b44607ab535be01091c0f24f079/six-1.10.0-py2.py3-none-any.whl
Collecting traceback2==1.4.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 155))
  Downloading https://files.pythonhosted.org/packages/17/0a/6ac05a3723017a967193456a2efa0aa9ac4b51456891af1e2353bb9de21e/traceback2-1.4.0-py2.py3-none-any.whl
Collecting unittest2==1.1.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 158))
  Downloading https://files.pythonhosted.org/packages/72/20/7f0f433060a962200b7272b8c12ba90ef5b903e218174301d0abfd523813/unittest2-1.1.0-py2.py3-none-any.whl (96kB)
Collecting zope.component==4.2.2 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 161))
  Downloading https://files.pythonhosted.org/packages/4c/c4/3f77127c876f49af478e8ea4dc223cda17730bb273c0d1606a4114c64008/zope.component-4.2.2.tar.gz (546kB)
Collecting zope.event==4.1.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 164))
  Downloading https://files.pythonhosted.org/packages/0e/87/75e3d62a3506953c2e56d15a150de31e5d92310e87db2c8b102dc01b0b8e/zope.event-4.1.0.tar.gz (476kB)
Collecting zope.interface==4.1.3 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 167))
  Downloading https://files.pythonhosted.org/packages/9d/81/2509ca3c6f59080123c1a8a97125eb48414022618cec0e64eb1313727bfe/zope.interface-4.1.3.tar.gz (141kB)
Collecting requests-toolbelt==0.8.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 185))
  Downloading https://files.pythonhosted.org/packages/97/8a/d710f792d6f6ecc089c5e55b66e66c3f2f35516a1ede5a8f54c13350ffb0/requests_toolbelt-0.8.0-py2.py3-none-any.whl (54kB)
Collecting chardet==3.0.2 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 188))
  Downloading https://files.pythonhosted.org/packages/b8/74/54fdc2fcfdd46b6c486964b64c5bb7db9a3664033ab25cf11aab06dd2a5d/chardet-3.0.2-py2.py3-none-any.whl (133kB)
Collecting urllib3==1.24.1 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 191))
  Downloading https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl (118kB)
Collecting certifi==2017.4.17 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 194))
  Downloading https://files.pythonhosted.org/packages/eb/01/c1f58987b777d6c4ec535b4e004a4a07bfc9db06f0c7533367ca6da8f2a6/certifi-2017.4.17-py2.py3-none-any.whl (375kB)
Collecting letsencrypt==0.7.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 205))
  Downloading https://files.pythonhosted.org/packages/fd/21/0c6f33829fadec8aca0c1ebb4d6f8101c05899356a58d1b2e506cb77cf18/letsencrypt-0.7.0-py2-none-any.whl
Collecting certbot==0.30.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 209))
  Downloading https://files.pythonhosted.org/packages/e0/5e/9881564f386c1294d6cf387d5c754d7eb3277507b46afac1c646d6ae6de6/certbot-0.30.0-py2.py3-none-any.whl (317kB)
Collecting acme==0.30.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 212))
  Downloading https://files.pythonhosted.org/packages/df/a7/fc6114c715233ab53c9571d3b710d596bc80446eac14e0906362fa69e4b1/acme-0.30.0-py2.py3-none-any.whl (85kB)
Collecting certbot-apache==0.30.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 215))
  Downloading https://files.pythonhosted.org/packages/37/37/46433ff4358e12d1caf4101308411bf1dad0df3e27e2e62c5037ca75d2e0/certbot_apache-0.30.0-py2.py3-none-any.whl (228kB)
Collecting certbot-nginx==0.30.0 (from -r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 218))
  Downloading https://files.pythonhosted.org/packages/ad/15/7f42f31ba068f837816647135a0704a8c89aad685df160407e92870c0277/certbot_nginx-0.30.0-py2.py3-none-any.whl (90kB)
Requirement already satisfied: setuptools>=1.0 in /opt/eff.org/certbot/venv/lib/python2.7/site-packages (from josepy==1.1.0->-r /tmp/tmp.NItPnL3PMY/letsencrypt-auto-requirements.txt (line 95)) (40.6.3)
Installing collected packages: argparse, pycparser, asn1crypto, cffi, ConfigArgParse, six, configobj, enum34, idna, ipaddress, cryptography, funcsigs, pyOpenSSL, josepy, linecache2, pbr, mock, ordereddict, pyparsing, packaging, parsedatetime, pytz, pyRFC3339, python-augeas, urllib3, chardet, certifi, requests, traceback2, unittest2, zope.interface, zope.event, zope.component, requests-toolbelt, acme, certbot, letsencrypt, certbot-apache, certbot-nginx
  Found existing installation: argparse 1.2.1
    Not uninstalling argparse at /usr/lib/python2.7, outside environment /opt/eff.org/certbot/venv
    Can't uninstall 'argparse'. No files were found to uninstall.
  Running setup.py install for pycparser: started
    Running setup.py install for pycparser: finished with status 'done'
  Running setup.py install for ConfigArgParse: started
    Running setup.py install for ConfigArgParse: finished with status 'done'
  Running setup.py install for configobj: started
    Running setup.py install for configobj: finished with status 'done'
  Running setup.py install for enum34: started
    Running setup.py install for enum34: finished with status 'done'
  Running setup.py install for ordereddict: started
    Running setup.py install for ordereddict: finished with status 'done'
  Running setup.py install for python-augeas: started
    Running setup.py install for python-augeas: finished with status 'done'
  Running setup.py install for zope.interface: started
    Running setup.py install for zope.interface: finished with status 'done'
  Running setup.py install for zope.event: started
    Running setup.py install for zope.event: finished with status 'done'
  Running setup.py install for zope.component: started
    Running setup.py install for zope.component: finished with status 'done'
Exception:
Traceback (most recent call last):
  File "/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", line 176, in main
    status = self.run(options, args)
  File "/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", line 393, in run
    use_user_site=options.use_user_site,
  File "/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/pip/_internal/req/__init__.py", line 57, in install_given_reqs
    **kwargs
  File "/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", line 919, in install
    use_user_site=use_user_site, pycompile=pycompile,
  File "/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", line 445, in move_wheel_files
    warn_script_location=warn_script_location,
  File "/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/pip/_internal/wheel.py", line 583, in move_wheel_files
    outrows = get_csv_rows_for_installed(reader)
  File "/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/pip/_internal/wheel.py", line 565, in get_csv_rows_for_installed
    for fpath, digest, length in old_csv_rows:
ValueError: too many values to unpack
=====================================================

Certbot has problem setting up the virtual environment.

We were not be able to guess the right solution from your pip 
output.

Consult https://certbot.eff.org/docs/install.html#problems-with-python-virtual-environment
for possible solutions.
You may also find some support resources at https://certbot.eff.org/support/ .
, 
Command Error: e[0m
2019-01-23 15:00:32,905 (ERROR) ee : e[91mERROR : Cannot RENEW SSL cert !e[0m
2019-01-23 15:00:32,906 (DEBUG) ee : e[95mRunning command: date -d "now" +%se[0m
2019-01-23 15:00:32,909 (DEBUG) ee : e[95mCommand Output: 1548255632
, 
Command Error: e[0m
2019-01-23 15:00:32,909 (DEBUG) ee : e[95mRunning command: date -d "`openssl x509 -in /etc/letsencrypt/live/iwp.cfimortgage.com/cert.pem -text -noout|grep "Not After"|cut -c 25-`" +%se[0m
2019-01-23 15:00:32,917 (DEBUG) ee : e[95mCommand Output: 1549479415
, 
Command Error: e[0m
2019-01-23 15:00:32,918 (DEBUG) ee : e[95mRunning command: date -d "now" +%se[0m
2019-01-23 15:00:32,921 (DEBUG) ee : e[95mCommand Output: 1548255632
, 
Command Error: e[0m
2019-01-23 15:00:32,921 (DEBUG) ee : e[95mRunning command: date -d "`openssl x509 -in /etc/letsencrypt/live/iwp.cfimortgage.com/cert.pem -text -noout|grep "Not After"|cut -c 25-`" +%se[0m
2019-01-23 15:00:32,929 (DEBUG) ee : e[95mCommand Output: 1549479415
, 
Command Error: e[0m
2019-01-23 15:00:32,929 (ERROR) ee : e[91mYour current cert will expire within 14 days.e[0m
2019-01-23 15:00:32,929 (DEBUG) ee : e[95mRunning command: date -d "`openssl x509 -in /etc/letsencrypt/live/iwp.cfimortgage.com/cert.pem -text -noout|grep "Not After"|cut -c 25-`" e[0m
2019-01-23 15:00:32,937 (DEBUG) ee : e[95mCommand Output: Wed Feb  6 18:56:55 UTC 2019
, 
Command Error: e[0m
2019-01-23 15:00:32,962 (ERROR) ee : e[91mCheck logs for reason `tail /var/log/ee/ee.log` & Try Again!!!e[0m

Try my answer here: Letsencrypt renewal nightmare

I followed the instructions and it did resolve the issue but it still didn’t fix the ee way of renewing the cert so now I am just going to have to do it manually with the sudo certbot --nginx command now?

Yes. Just enter sudo certbot --nginx, next - choose site to renew (enter num) and answer redirect or not users to https-version of your site.
If it’s ok ssl-cert will be renew.