EasyEngine Git integration: is it possible to disable it?

Hi, I was trying to install etckeeper at my server, to keep track of all changes happening in /etc, but it doesn’t fully work because EE already keeps track of some /etc/ subfolders (nginx, mysql, etc).

I had bad experiences recently when an “incorrect” ee update wiped out the whole /etc/nginx folder (doing a --purge on the old nginx package and then installing the new nginx one), so I prefer to have etckeeper managing all of that.

I couldn’t find any way to disable that. Is it possible?